industrial microbiology research papers

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Industrial microbiology articles within The ISME Journal

Article 07 June 2023 | Open Access

Inter-kingdom interactions and stability of methanogens revealed by machine-learning guided multi-omics analysis of industrial-scale biogas plants

• Roland Wirth
• , Zoltán Bagi
•  &  Gergely Maróti

Article 02 May 2022 | Open Access

Discovery of lignin-transforming bacteria and enzymes in thermophilic environments using stable isotope probing

• David J. Levy-Booth
• , Laura E. Navas
•  &  William W. Mohn

Article | 23 October 2021

Activity-based, genome-resolved metagenomics uncovers key populations and pathways involved in subsurface conversions of coal to methane

• Luke J. McKay
• , Heidi J. Smith
•  &  Matthew W. Fields

Article | 28 April 2021

Functional genome-centric view of the CO-driven anaerobic microbiome

• Haowen Duan
• , Pinjing He
•  &  Fan Lü

Article | 02 September 2019

Temperature as competitive strategy determining factor in pulse-fed aerobic bioreactors

• Gerben Roelandt Stouten
• , Carmen Hogendoorn
•  &  Robbert Kleerebezem

Article 16 July 2018 | Open Access

Metagenomics reveals functional synergy and novel polysaccharide utilization loci in the Castor canadensis fecal microbiome

• Zachary Armstrong
• , Keith Mewis
•  &  Steven J. Hallam

Original Article 12 September 2017 | Open Access

DNA-SIP based genome-centric metagenomics identifies key long-chain fatty acid-degrading populations in anaerobic digesters with different feeding frequencies

• Ryan M Ziels
• , Diana Z Sousa
•  &  David A C Beck

Original Article | 18 November 2014

Mechanisms of direct inhibition of the respiratory sulfate-reduction pathway by (per)chlorate and nitrate

• Hans K Carlson
• , Jennifer V Kuehl
•  &  John D Coates

Original Article | 27 March 2014

Elevated nitrate enriches microbial functional genes for potential bioremediation of complexly contaminated sediments

• , Qin Zhang
•  &  Zhili He

Original Article | 26 September 2013

Microbial expression profiles in the rhizosphere of willows depend on soil contamination

• Etienne Yergeau
• , Sylvie Sanschagrin
•  &  Charles W Greer

Original Article | 29 August 2013

Linkage between bacterial and fungal rhizosphere communities in hydrocarbon-contaminated soils is related to plant phylogeny

• Terrence H Bell
• , Saad El-Din Hassan
•  &  Marc St-Arnaud

Original Article | 28 February 2013

Enrichment of specific protozoan populations during in situ bioremediation of uranium-contaminated groundwater

• Dawn E Holmes
• , Ludovic Giloteaux
•  &  Derek R Lovley

Original Article | 07 February 2013

Predictable bacterial composition and hydrocarbon degradation in Arctic soils following diesel and nutrient disturbance

• , Etienne Yergeau

Original Article | 19 July 2012

Link between microbial composition and carbon substrate-uptake preferences in a PHA-storing community

• Maria G E Albuquerque
• , Gilda Carvalho
•  &  Per H Nielsen

Original Article | 12 May 2011

Identification of a novel acetate-utilizing bacterium belonging to Synergistes group 4 in anaerobic digester sludge

• Tsukasa Ito
• , Kazumi Yoshiguchi
•  &  Satoshi Okabe

Original Article | 05 May 2011

Increase in Alphaproteobacteria in association with a polychaete, Capitella sp. I, in the organically enriched sediment

• Tadao Kunihiro
• , Hiroyuki Takasu
•  &  Hiroaki Tsutsumi

Original Article | 13 January 2011

Comparative genomics of two newly isolated Dehalococcoides strains and an enrichment using a genus microarray

• Patrick K H Lee
• , Dan Cheng
•  &  Lisa Alvarez-Cohen

Original Article | 16 December 2010

Relationship between bacterial diversity and function under biotic control: the soil pesticide degraders as a case study

• Cécile Monard
• , Philippe Vandenkoornhuyse
•  &  Françoise Binet

Original Article | 25 November 2010

Novel Clostridium populations involved in the anaerobic degradation of Microcystis blooms

• , Liang Guo
•  &  Qinglong L Wu

Original Article | 21 October 2010

Microbial biodegradation of aromatic alkanoic naphthenic acids is affected by the degree of alkyl side chain branching

• Richard J Johnson
• , Ben E Smith
•  &  Corinne Whitby

Original Article | 23 September 2010

Functional gene diversity of soil microbial communities from five oil-contaminated fields in China

• Yuting Liang
• , Joy D Van Nostrand
•  &  Jizhong Zhou

Original Article | 26 August 2010

The earthworm Aporrectodea caliginosa stimulates abundance and activity of phenoxyalkanoic acid herbicide degraders

• , Adrienne Zaprasis
•  &  Marcus A Horn

Original Article | 12 August 2010

‘ Candidatus Accumulibacter’ gene expression in response to dynamic EBPR conditions

•  &  Katherine D McMahon

Original Article | 05 August 2010

Function-specific response to depletion of microbial diversity

• Hannes Peter
• , Sara Beier
•  &  Lars J Tranvik

Multiple syntrophic interactions in a terephthalate-degrading methanogenic consortium

• Athanasios Lykidis
• , Chia-Lung Chen
•  &  Wen-Tso Liu

Original Article | 29 July 2010

Genome-scale dynamic modeling of the competition between Rhodoferax and Geobacter in anoxic subsurface environments

• , Mounir Izallalen

Original Article | 06 May 2010

Impact of elevated nitrate on sulfate-reducing bacteria: a comparative Study of Desulfovibrio vulgaris

Original Article | 29 April 2010

DNA-SIP identifies sulfate-reducing Clostridia as important toluene degraders in tar-oil-contaminated aquifer sediment

• Christian Winderl
• , Holger Penning
•  &  Tillmann Lueders

Commentary | 01 April 2010

Further limitations of phylogenetic group-specific probes used for detection of bacteria in environmental samples

• Jeremy J Barr
• , Linda L Blackall
•  &  Philip Bond

Original Article | 01 April 2010

Identification and transcriptional analysis of trans -DCE-producing reductive dehalogenases in Dehalococcoides species

• Wai Ling Chow
•  &  Jianzhong He

Original Article | 18 March 2010

Responses of microbial community functional structures to pilot-scale uranium in situ bioremediation

• , Wei-Min Wu

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Volume 48, Issue 9-10, December 2021

Special issue: arnold l. demain - a life lived, edited by richard h baltz, erick j vandamme, joan w bennett, spiros n agathos, sergio sánchez, hiroyuki osada, zixin deng, and ramon gonzalez, introduction and commentaries for the special issue: “arnold l. demain—a life lived”.

• View article

My gratitude for Arny's friendship with me

Professor arnold l. (arny) demain's historical position in the rise of industrial microbiology and biotechnology, streptomyces clavuligerus: the omics era.

• Supplementary data

Short Communication

Enhanced esterase activity during the degradation of dibutyl phthalate by fusarium species in liquid fermentation, mini-review, the infinite possibilities of rna therapeutics, basic and applied research on multiple aminoglycoside antibiotic resistance of actinomycetes: an old-timer's recollection, original paper, rapid evaluation of the substrate specificity of 3-nitrobenzoic acid dioxygenase mnbab via colorimetric detection using saltzman reagent, deciphering the mechanism by which the yeast phaffia rhodozyma responds adaptively to environmental, nutritional, and genetic cues, preclinical pharmacology and toxicology evaluation of an anti-cd52 monoclonal antibody produced by perfusion fermentation process, food biotechnology & probiotics, challenges in the production and use of probiotics as therapeuticals in cancer treatment or prevention, properties of an acid-tolerant, persistent cheddar cheese isolate, lacticaseibacillus paracasei gcrl163, original papers, streptomyces venezuelae nrrl b-65442: genome sequence of a model strain used to study morphological differentiation in filamentous actinobacteria, dissecting the role of the two streptomyces peucetius var. caesius glucokinases in the sensitivity to carbon catabolite repression, the sexual spore pigment asperthecin is required for normal ascospore production and protection from uv light in aspergillus nidulans, mini-reviews, the aminoshikimic acid pathway in bacteria as source of precursors for the synthesis of antibacterial and antiviral compounds, monoterpenoid biosynthesis by engineered microbes, rewiring the microbial metabolic network for efficient utilization of mixed carbon sources, effective use of biosensors for high-throughput library screening for metabolite production, artificial cell factory design for shikimate production in escherichia coli, engineering acetyl-coa supply and erg9 repression to enhance mevalonate production in saccharomyces cerevisiae, discovery of an alternative pathway of peptidoglycan biosynthesis: a new target for pathway specific inhibitors, genome mining for drug discovery: progress at the front end, biosynthesis and biological function of secondary metabolites of the rice blast fungus pyricularia oryzae, anti-cryptococcal activity of preussolides a and b, phosphoethanolamine-substituted 24-membered macrolides, and leptosin c from coprophilous isolates of preussia typharum, traminines a and b, produced by fusarium concentricum , inhibit oxidative phosphorylation in saccharomyces cerevisiae mitochondria, characterization of cross-species transcription and splicing from penicillium to saccharomyces cerevisiae, trans -2-hexenal downregulates several pathogenicity genes of pseudogymnoascus destructans , the causative agent of white-nose syndrome in bats, characterization of streptomyces sp. ls462 with high productivity of echinomycin, a potent antituberculosis and synergistic antifungal antibiotic, email alerts.

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Showing 1 - 13 of 90

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Cu(II)-tyrosinase enzyme catalyst mediated synthesis of mosquito larvicidal active pyrazolidine-3,5-dione derivatives with molecular docking studies and their ichthyotoxicity analysis

Velmurugan Loganathan, SurendraKumar Radhakrishnan,  [ ... ], Akbar Idhayadhulla

Lactobacillus plantarum SMFM2017-YK1 and Limosilactobacillus fermentum SMFM2017-NK1 to alleviate periodontitis">Development of postbiotics by bioconverting whey using Lactobacillus plantarum SMFM2017-YK1 and Limosilactobacillus fermentum SMFM2017-NK1 to alleviate periodontitis

Yuna Choi, Eunyoung Park, Yohan Yoon, Jimyeong Ha

Bipyridines mediate electron transfer from an electrode to nicotinamide adenine dinucleotide phosphate

Fumiya Wayama, Noriyuki Hatsugai, Yasuaki Okumura

High surface area nitrogen-functionalized Ni nanozymes for efficient peroxidase-like catalytic activity

Anuja Tripathi, Kenneth D. Harris, Anastasia L. Elias

Catalysis of the electrochemical oxygen reduction reaction (ORR) by animal and human cells

Simon Guette-Marquet, Christine Roques, Alain Bergel

Synthesis of a precursor of D-fagomine by immobilized fructose-6-phosphate aldolase

Gerard Masdeu, Luis Miguel Vázquez,  [ ... ], Marina Guillén

Stable and efficient immobilization of bi-enzymatic NADPH cofactor recycling system under consecutive microwave irradiation

Rong Chen, Qiuhui Wei,  [ ... ], Tian Xie

The biosynthetic pathway to tetromadurin (SF2487/A80577), a polyether tetronate antibiotic

Rory F. Little, Markiyan Samborskyy, Peter F. Leadlay

Structure-function investigation of 3-methylaspartate ammonia lyase reveals substrate molecular determinants for the deamination reaction

Veronica Saez-Jimenez, Željka Sanader Maršić,  [ ... ], Valeria Mapelli

The biosynthetic pathway to ossamycin, a macrocyclic polyketide bearing a spiroacetal moiety

Oksana Bilyk, Markiyan Samborskyy, Peter F. Leadlay

Design of stable magnetic hybrid nanoparticles of Si-entrapped HRP

Sonali Correa, Sara Puertas,  [ ... ], Lorena Betancor

Effective detection of biocatalysts with specified activity by using a hydrogel-based colourimetric assay – β-galactosidase case study

Karolina Labus

Modulating the antioxidant system by exogenous 2-(3,4-dichlorophenoxy) triethylamine in maize seedlings exposed to polyethylene glycol-simulated drought stress

Tenglong Xie, Wanrong Gu,  [ ... ], Wenhua Li

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